Data & Standards

FHIR to OMOP using PySpark on AWS Glue

All Articles are Available: Orcid ID: https://orcid.org/my-orcid?orcid=0009-0009-3175-8563 Science Open ID: https://www.scienceopen.com/user/2c98a8bc-b8bb-49b3-9c91-2f2986a7e16e Safe Creative…

The Auditory Attention Switching Dataset (AASD) provides a large-scale, open-access collection of electroencephalography (EEG) recordings designed to investigate spontaneous auditory attention…

This dataset provides indicators on accessibility to hospitals with surgery cares for french communes. Data have been processed with R and travel time by car with an open source routing engine based…

Disability demographics, web accessibility compliance, assistive technology usage, and related data

Awesome Active Domain Adaptation for Medical Image Analysis

The AHRQ CDS Connect API (https://cds.ahrq.gov/cds_api) is part of the CDS Connect project, sponsored by the Agency for Healthcare Research and Quality (AHRQ), and developed under contract with AHRQ…

The CDS Authoring Tool is part of the CDS Connect project https://cds.ahrq.gov/, sponsored by the Agency for Healthcare Research and Quality (AHRQ), and developed under contract with AHRQ by MITRE's…

The AHRQ CDS CQL Services tool is part of the CDS Connect project https://cds.ahrq.gov/, sponsored by the Agency for Healthcare Research and Quality (AHRQ), and developed under contract with AHRQ by…

The AHRQ CDS Pain Management Summary tool is part of the CDS Connect project https://cds.ahrq.gov/, sponsored by the Agency for Healthcare Research and Quality (AHRQ), and developed under contract…

AI Data Engineering Healthcare Platform: PySpark Medallion Lakehouse, Airflow DAGs, 5 ML Models, Local LLM RAG, and FastAPI Clinical Architecture.

Dataset and code for "Uncertainty-Informed Deep Transfer Learning of PFAS Toxicity"

Investigative data journalism: quantifying fixable waste in US healthcare, one issue at a time. Open-source analysis of CMS, OECD, and federal datasets. $428.6B in savings identified so far across 8…

AMONuSeg

The Android FHIR SDK is a set of Kotlin libraries for building offline-capable, mobile-first healthcare applications using the HL7® FHIR® standard on Android.

A data set of 20 million calculated off-equilibrium conformations for organic molecules

Introduction The Surgical Planning Laboratory (SPL) and the National Center for Image Guided Therapy (NCIGT) are making this dataset available as a resource to aid in the development of algorithms…

API FHIR Annuaire Santé (IRIS DP) : le nouveau service de publication développé et maintenu par l’Agence du Numérique en Santé (ANS)

[WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation

gematik provides a comprehensive overview of the e-prescription interfaces. This API documentation serves as a supplement to gematik's standard regulatory documents and details the e-prescription…

API specification for gematik's TI-Messenger - a messaging standard, which will enable healthcare personnel in the German healthcare sector to communicate interoperable via DSGVO-conform…

API specification for gematik Directory, a service which provides Information about organizations and practitioners in the german healthcare.

The reference validator is a tool to perform advanced validation of FHIR resources for TI applications and interoperability standards

Development build for SMART Cancer Navigator

AqSolDB: A curated aqueous solubility dataset contains 9.982 unique compounds.

Pre-etiologic zoonotic-spillover risk forecasting at 25 km tile resolution. Methodology, 25-event validation cohort, bio-domain accountability framework, MCP server source. Aqta Technologies Limited…

The validated and approved openEHR Arhcetypes used by DIPS AS

Arcwell Open Source Clinical Research Platform

Talk: Analysis Results Datasets (ARD) for clinical trial readouts — R/Medicine 2025

Scripts for analysing arim datasets

[BIBM2024] MEEG and AT-DGNN: Improving EEG Emotion Recognition with Music Introducing and Graph-based Learning

ETL tool for exporting OpenEHR compositions to multiple datastore backends

The MEDIC ATNA API project provides a simple to use series of utility classes centered around creating IHE Audit Trail and Node Authentication (ATNA) audit messages (ITI-20)

Protocol Twenty-eight medication-na ve patients diagnosed with attention-deficit/hyperactivity disorder (ADHD) and twenty-eight healthy control participants completed a Go/No-Go task (Sustained…

Autonomous medical imaging AI research — bring any dataset, the agent runs experiments automatically. Built on karpathy/autoresearch.

Azure AHDS FHIR MCP Server

Customization model for Azure Health Data Services.

This repository contains automation to deploy OpenEMR on Azure.

This repository contains automation to deploy OpenMRS on Azure.

Generate profile-aware TypeScript interfaces, validators, and a type-safe FHIR client from any FHIR Implementation Guide

Hazir, Selçuk, Kaya B, Harry K., B, Mustapha Touray, B, Harun Çimen, B, David Shapiro-Ilan (2022): Basic laboratory and field manual for conducting research with the entomopathogenic nematodes,…

Basic Recommender System that provides Content Based Filtering or Product based Recommendations over MovieLens Movies data-set to be used with native and AWS EMR Hadoop

BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.

An API designed to serve Medicare beneficiaries' demographic, enrollment, and claims data using the HL7® FHIR® Standard format.

MATLAB / Octave tools for BIDS datasets

Index BIDS datasets fast, locally or in the cloud

📊 Big Data analysis project exploring the relationship between educational attainment and nutrition quality using Hadoop, Hive, and Zeppelin on a US-wide health dataset.

A unifying framework for biomedical research knowledge graphs

An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our…

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

A FHIR® Server with internal, fast CQL Evaluation Engine

Control your FHIR® Server from the Command Line

OMOP standardization pipeline for ICU databases

A lightweight, interactive web tool designed to master Biomedical Engineering vocabulary through built-in quizzes, instant translation, and study tracking.

Board Game Dataset Model is aggregated from two major board game data sources including BoardGameGeek and Board Game Atlas

Official code release for BOLD5000 Release 2.0

A collection of projects and libraries to help implement FHIR-based products and solutions.

This repository contains the 2nd edition of the Book

Utilities to download and load an MRI brain tumor dataset with Python, providing 2D slices, tumor masks and tumor classes.

Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of…