genome_updater
importedsoftware/genome-updater
genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/pirovc/genome_updater
- Documentation
- unknown
- Tags
- bash · bioinformatics · database · download · genbank · genome · genomes · genomics
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- genome-browserbioinformatics · genome · genomes
Genome browser to visualize and analyze genomic data
- ncbi-genome-downloadbioinformatics · genbank · genomics
Scripts to download genomes from the NCBI FTP servers
- pyGenomeVizbioinformatics · genbank · genomics
A genome visualization python package for comparative genomics
- deepsomaticbioinformatics · genome · genomics
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
- deepvariantbioinformatics · genome · genomics
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
- flaggerbioinformatics · genome · genomics
Evaluating genome assemblies
- api.github.com/repos/pirovc/genome_updaterretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-07-06, 172 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/24.json→ .entries["genome-updater"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.