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gget

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software/gget

🧬 gget enables efficient querying of genomic reference databases

Machine-generated from the listed sources and not yet reviewed by a human.

record
Category
Software & Systems
Subcategory
unknown
License
BSD-2-Clause(osi)
Status
active
Maturity
deployed
Organization
scverse
Country
unknown
Documentation
unknown
Tags
alphafold · alphafold2 · archs4 · blast · cellxgene · databases · enrichment-analysis · enrichr
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • PHIStructalphafold · alphafold2

    Published in Bioinformatics. Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance…

  • enrich_omicsenrichment-analysis · enrichr

    A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

  • :apple: Simple script that parses data from open source databases to the standard Lifyzer database structure :green_apple:

  • decouplerenrichment-analysis

    Python package to perform enrichment analysis from omics data.

  • pygnaenrichment-analysis

    A Python package for gene network analysis

  • CLI for downloading AlphaFold structures using UniProt IDs or FASTA files

sources
  1. api.github.com/repos/scverse/gget
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-08-03, 1183 stars, license reported as BSD-2-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/34.json→ .entries["gget"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.