SARS2seq
importedsoftware/sars2seq
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- AGPL-3.0(osi)
- Status
- dormant
- Maturity
- deployed
- Organization
- RIVM-bioinformatics
- Country
- unknown
- Repository
- github.com/RIVM-bioinformatics/SARS2seq
- Documentation
- unknown
- Tags
- bioinformatics · consensus-sequences · coronavirus · coronavirus-analysis · ngs-analysis · public-health · python · rivm
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- ViroConstrictorbioinformatics · consensus-sequences · ngs-analysis · public-health · rivm
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome
- Jovian_archivepublic-health · rivm
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics…
- coronainfobdcoronavirus · coronavirus-analysis
Real-time corona-virus tracker of Bangladesh 🇧🇩 which includes latest updates, data visualization, public awareness from WHO and some advice to aware people. 🥰❤
- covid-19coronavirus · coronavirus-analysis
Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a…
- COVID19MagyarEpicoronavirus · coronavirus-analysis
A magyarországi koronavírus járvány valós idejű, kvantitatív epidemiológiája.
- simulatorcoronavirus · coronavirus-analysis
Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022
- api.github.com/repos/RIVM-bioinformatics/SARS2seqretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2024-07-03, 6 stars, license reported as AGPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/27.json→ .entries["sars2seq"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.