scdownstream
importedsoftware/scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- nf-core
- Country
- unknown
- Homepage
- nf-co.re/scdownstream
- Repository
- github.com/nf-core/scdownstream
- Documentation
- unknown
- Tags
- clustering · dimensionality-reduction · integration · nextflow · nf-core · pipeline · quality-control · scverse
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- diaproteomicsnextflow · nf-core · pipeline
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
- pacvarnextflow · nf-core · pipeline
Longread PacBio sequencing processing for WGS and PureTarget
- proteinannotatornextflow · nf-core · pipeline
Generation of sequence-level annotations for amino acid sequences
- rarediseasenextflow · nf-core · pipeline
Call and score variants from WGS/WES of rare disease patients.
- rnavarnextflow · nf-core · pipeline
gatk4 RNA variant calling pipeline
- scnanoseqnextflow · nf-core · pipeline
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
- api.github.com/repos/nf-core/scdownstreamretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-05, 113 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/15.json→ .entries["scdownstream"]
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