GEMSCAN
importedsoftware/gemscan
Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- NCI-CGR
- Country
- unknown
- Homepage
- nci-cgr.github.io/GEMSCAN/
- Repository
- github.com/NCI-CGR/GEMSCAN
- Documentation
- unknown
- Tags
- deepvariant · gatk4-haplotypecaller · snakemake · strelka2 · variant-calling · workflow
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- snakemake-ont-bacterial-variantssnakemake · variant-calling · workflow
A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
- variant-calling-at-scaledeepvariant · variant-calling
Scalable and High Performance Variant Calling on Cluster Environments
- snakemake-ms-proteomicssnakemake · workflow
Pipeline for automatic processing and quality control of mass spectrometry data
- variantbenchmarkingvariant-calling · workflow
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
- variantcallingvariant-calling · workflow
Nextflow DSL2 pipeline to call variants on long read alignment.
- gatkVariantCallingsnakemake · variant-calling
Snakemake pipeline for variant calling using GATK
- api.github.com/repos/NCI-CGR/GEMSCANretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-06-22, 8 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/61.json→ .entries["gemscan"]
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