variant-calling-at-scale

Category

Software & Systems

Subcategory

unknown

License

Apache-2.0(osi)

Status

dormant

Maturity

deployed

Organization

abs-tudelft

Country

unknown

Homepage

unknown

Repository

github.com/abs-tudelft/variant-calling-at-scale

Documentation

unknown

Tags

bwa · deepvariant · duplicates-removal · gcp-dataproc-cluster · minimap2 · variant-calling

Regulatory

unknown

• tahashmi

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• GEMSCANdeepvariant · variant-calling

  Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.

• CANCER_VAR_CALLbwa

  End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis

• deepvariantdeepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

• Personal-Genome-Pipelinedeepvariant

  Whole genome sequencing analysis pipeline for consumer hardware. 100% local, Docker-powered, free and open source.

• arcsvvariant-calling

  Complex structural variant detection from WGS data

• BALSAMICvariant-calling

  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

1. api.github.com/repos/abs-tudelft/variant-calling-at-scale
   retrieved 2026-08-05 · via github-api

   Machine-imported from GitHub search. Last push 2022-02-13, 9 stars, license reported as Apache-2.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

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