grenepipe
importedsoftware/grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- moiexpositoalonsolab
- Country
- unknown
- Homepage
- grene-net.org
- Documentation
- unknown
- Tags
- ancient-dna · evolve-and-resequence · genomic-variant-calling · pool-sequencing · population-genetics · snakemake · snakemake-workflow · variant-calling
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- snakemake-ms-proteomicssnakemake · snakemake-workflow
Pipeline for automatic processing and quality control of mass spectrometry data
- warlocksnakemake · snakemake-workflow
Warlock is a snakemake workflow to spawn multiple demons (deme-based oncology models) as jobs running around on a cluster environment 😈😈
- bam-to-ychr-callsancient-dna · variant-calling
From .bam to .csv with annotated Y-chromosome variants
- BaseVarCpopulation-genetics · variant-calling
The repo was not under active development. Check out angsd toolkit for low depth data analyses.
- gatkVariantCallingsnakemake · variant-calling
Snakemake pipeline for variant calling using GATK
- GEMSCANsnakemake · variant-calling
Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
- api.github.com/repos/moiexpositoalonsolab/grenepiperetrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2025-06-24, 117 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/10.json→ .entries["grenepipe"]
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