gubbins
importedsoftware/gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-2.0(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- nickjcroucher.github.io/gubbins/
- Repository
- github.com/nickjcroucher/gubbins
- Documentation
- unknown
- Tags
- bioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · research
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- albatradisbioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen
Comparative TraDIS analysis
- lodestonebioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen
Mycobacterial pipeline
- plasmidtronbioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen
Assembling the cause of phenotypes and genotypes from NGS data
- tiptoftbioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases
Predict plasmids from uncorrected long read data
- czid-webbioinformatics · bioinformatics-pipeline · genomics · global-health
Infectious Disease Sequencing Platform
- gcp-for-bioinformaticsbioinformatics · bioinformatics-pipeline · genomics
GCP for Bioinformatics Researchers
- api.github.com/repos/nickjcroucher/gubbinsretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2025-08-27, 221 stars, license reported as GPL-2.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/27.json→ .entries["gubbins"]
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