kallistobustools
importedsoftware/kallistobustools
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- pachterlab
- Country
- unknown
- Homepage
- kallistobus.tools/
- Repository
- github.com/pachterlab/kallistobustools
- Documentation
- unknown
- Tags
- bustools · kallisto · rna-seq · single-cell
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- scrnaseqbustools · kallisto
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
- alevin-fryrna-seq · single-cell
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
- brierna-seq · single-cell
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
- CCSinglecellrna-seq · single-cell
A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.
- cellSNPrna-seq · single-cell
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
- DeepCyclerna-seq · single-cell
Cell cycle inference in single-cell RNA-seq
- api.github.com/repos/pachterlab/kallistobustoolsretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-03-10, 121 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/33.json→ .entries["kallistobustools"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.