pySCENIC
importedsoftware/pyscenic
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- aertslab
- Country
- unknown
- Homepage
- scenic.aertslab.org
- Repository
- github.com/aertslab/pySCENIC
- Documentation
- unknown
- Tags
- gene-regulatory-network · single-cell · transcription-factors · transcriptomics
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- SCopegene-regulatory-network
Fast visualization tool for large-scale and high dimensional single-cell data
- alevin-frysingle-cell · transcriptomics
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
- DRVIsingle-cell · transcriptomics
Unsupervised Deep Disentangled Representation of Single-Cell Omics
- MUDANsingle-cell · transcriptomics
Multi-sample Unified Discriminant ANalysis
- Pandosingle-cell · transcriptomics
Multiome GRN inference.
- PertEvalsingle-cell · transcriptomics
Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
- api.github.com/repos/aertslab/pySCENICretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2025-06-26, 630 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
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/v1/entries/39.json→ .entries["pyscenic"]
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