sarek
importedsoftware/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- nf-core
- Country
- unknown
- Homepage
- nf-co.re/sarek
- Repository
- github.com/nf-core/sarek
- Documentation
- unknown
- Tags
- annotation · bioinformatics · cancer · conda · containers · gatk4 · genomics · germline
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- mgp1000bioinformatics · cancer · genomics · germline
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
- V-pipebioinformatics · conda · genomics
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
- cromwellbioinformatics · containers
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
- DRAMannotation · bioinformatics · genomics
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
- vcfannoannotation · bioinformatics · genomics
annotate a VCF with other VCFs/BEDs/tabixed files
- nRexgermline
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
- api.github.com/repos/nf-core/sarekretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-04, 590 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/53.json→ .entries["sarek"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.