singlecell-variantcalling-pipeline
importedsoftware/singlecell-variantcalling-pipeline
This repository provides an end-to-end workflow for variant calling from single-cell RNA-seq data (scRNA-seq) using Cell Ranger, custom Python BAM splitting, and cellsnp-lite. The pipeline works…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Documentation
- unknown
- Tags
- 10x-genomics · cellsnp-lite · single-cell · single-cell-rna-seq · variant-calling
- Regulatory
- unknown
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Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
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A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
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CellNavi is a deep learning framework designed to predict genes driving cellular transitions.
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Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
- liana-pysingle-cell · single-cell-rna-seq
LIANA+: an all-in-one framework for cell-cell communication
- api.github.com/repos/YanshengLuo/singlecell-variantcalling-pipelineretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2025-06-05, 3 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
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