transflow
importedsoftware/transflow
A snakemake workflow for WGS-based tuberculosis transmission analysis
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- dormant
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/cvn001/transflow
- Documentation
- unknown
- Tags
- bioinformatics · epidemiology · snakemake · transmission · tuberculosis · wgs
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- EpiEstimAppepidemiology · transmission
Source code for the EpiEstim app.
Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.
- Data from: Use of the lung flute ECO to assist in sputum collection for tuberculosis test…tuberculosis
The Lung Flute ECO, a self-powered, low cost, oscillatory positive expiratory pressure (OPEP) device, assisted people with presumptive tuberculosis to produce an adequate sputum volume for…
- vcf2neotuberculosis
A tool to import SnpEff annotated files to a Neo4j Graph database
- dea_seuratbioinformatics · snakemake
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
- mixscape_seuratbioinformatics · snakemake
A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's…
- api.github.com/repos/cvn001/transflowretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2024-12-03, 20 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/17.json→ .entries["transflow"]
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