WGS-Analysis-VariantCalling
importedsoftware/wgs-analysis-variantcalling
Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- active
- Maturity
- deployed
- Organization
- AMRmicrobiology
- Country
- unknown
- Homepage
- unknown
- Documentation
- unknown
- Tags
- assembly · bacterial-genomes · illumina · variant-calling · variantcalling · wgs
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- viralreconassembly · illumina
Assembly and intrahost/low-frequency variant calling for viral samples
- SNPBacbacterial-genomes · variant-calling
SNP and variant calling pipeline for bacteria
- transflowwgs
A snakemake workflow for WGS-based tuberculosis transmission analysis
- NanoVarBenchillumina · variant-calling
Evaluating Nanopore-based bacterial variant calling
- baktabacterial-genomes
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
- PhyloTracebacterial-genomes
PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.
- api.github.com/repos/AMRmicrobiology/WGS-Analysis-VariantCallingretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-03-06, 6 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/47.json→ .entries["wgs-analysis-variantcalling"]
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