zUMIs
importedsoftware/zumis
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- dormant
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/sdparekh/zUMIs
- Documentation
- unknown
- Tags
- barcodes · dge · expression · fastq · pipeline · rna-seq · rnaseq · single-cell
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- scnanoseqpipeline · rna-seq · rnaseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
- cell2cellrna-seq · rnaseq
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
- salmonrna-seq · rnaseq
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
- rnavarpipeline · rnaseq
gatk4 RNA variant calling pipeline
- viralmetagenomefastq · pipeline
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
- bioinformatics-workflowspipeline · rna-seq
minimal example implementations for bioinformatics workflow managers
- api.github.com/repos/sdparekh/zUMIsretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2024-07-12, 297 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/3.json→ .entries["zumis"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.