salmon
importedsoftware/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- BSD-3-Clause(osi)
- Status
- active
- Maturity
- deployed
- Organization
- COMBINE-lab
- Country
- unknown
- Homepage
- combine-lab.github.io/salmon
- Repository
- github.com/COMBINE-lab/salmon
- Documentation
- unknown
- Tags
- bioinformatics · c-plus-plus · gene-expression · quantification · quasi-mapping · rna-seq · rna-seq-quantification · rnaseq
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- cell2cellbioinformatics · rna-seq · rnaseq
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
- scnanoseqrna-seq · rnaseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
- zUMIsrna-seq · rnaseq
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
- alevin-fryquantification · rna-seq
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
- powsimRgene-expression · rna-seq
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and…
- alphaquantbioinformatics · quantification
An open-source Python package for accurate and sensitive peptide and protein quantification.
- api.github.com/repos/COMBINE-lab/salmonretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-04, 924 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/31.json→ .entries["salmon"]
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