snakemake-illumina-gatkvariant
importedprotocols/snakemake-illumina-gatkvariant
A Snakemake workflow for variant calling using GATK4 best practices
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Protocols & Guidelines
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- dormant
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Documentation
- unknown
- Tags
- bioinformatics · gatk4 · ngs · variant-annotations · variant-calling
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- NCHHSTP-DTBE-Varpipe-WGSbioinformatics · variant-annotations · variant-calling
This repository contains an analysis pipeline developed to characterize WGS output
- gatkVariantCallinggatk4 · variant-calling
Snakemake pipeline for variant calling using GATK
- rnavargatk4 · variant-calling
gatk4 RNA variant calling pipeline
- sarekbioinformatics · gatk4
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
- CalliNGS-NFbioinformatics · ngs · variant-calling
GATK RNA-Seq Variant Calling in Nextflow
- Exome-Analysis-End-to-ENDbioinformatics · ngs · variant-calling
Automated end to end NGS exome analysis pipeline. One command from FASTQ to fully annotated variants with QC, alignment, GATK calling, ANNOVAR and snpEff annotation, functional classification, and…
- api.github.com/repos/kevin-wamae/snakemake-illumina-gatkvariantretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2024-02-02, 6 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/46.json→ .entries["snakemake-illumina-gatkvariant"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.