VariantCaller
importedprotocols/variantcaller
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Protocols & Guidelines
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- dormant
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/RhettRautsaw/VariantCaller
- Documentation
- unknown
- Tags
- bcftools · gatk · gatk-bestpractices · indels · phasing · samtools · snps · variant-calling
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- snp-placersamtools · snps · variant-calling
Take information about snps on short sequence reads and accurately place the snps in a reference genome
- cievadindels · snps
A tool suite for a simple, streamlined and rapid evaluation of variant callsets
- octopusphasing · variant-calling
Bayesian haplotype-based mutation calling
- strainFlyephasing · variant-calling
Pipeline for analyzing rare mutations in metagenome-assembled genomes
- CalliNGS-NFgatk · variant-calling
GATK RNA-Seq Variant Calling in Nextflow
- GermlineEnrichmentgatk · variant-calling
Variant calling pipeline for germline enrichment NGS data
- api.github.com/repos/RhettRautsaw/VariantCallerretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2022-04-29, 3 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/29.json→ .entries["variantcaller"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.