octopus
importedsoftware/octopus
Bayesian haplotype-based mutation calling
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- luntergroup
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/luntergroup/octopus
- Documentation
- unknown
- Tags
- bioinformatics · de-novo-mutation · genomics · haplotypes · phasing · single-cell · somatic-variants · variant-calling
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- strainFlyebioinformatics · phasing · variant-calling
Pipeline for analyzing rare mutations in metagenome-assembled genomes
- ClairSbioinformatics · genomics · haplotypes
ClairS: a deep-learning method for long-read tumor–normal pair somatic small variant calling
- Reads2Maphaplotypes · variant-calling
A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.
- nRexsomatic-variants · variant-calling
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
- Monopogensingle-cell · somatic-variants
SNV calling from single cell sequencing
- CANCER_VAR_CALLbioinformatics · somatic-variants
End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis
- api.github.com/repos/luntergroup/octopusretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-02-13, 325 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/14.json→ .entries["octopus"]
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