basset
importedsoftware/basset
Nextflow pipeline for species-specific typing of bacteria
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- MDHHS-Bioinformatics
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/MDHHS-Bioinformatics/basset
- Documentation
- unknown
- Tags
- bacteria · epidemiology · genomic-epidemiology · genotyping · outbreak · public-health · serotyping · typing
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- corgebacteria · epidemiology · genomic-epidemiology · outbreak
Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance and outbreak investigations
- poodlebacteria · genomic-epidemiology · outbreak
Nextflow pipeline that integrates reference-based SNP calling, recombination filtering, and pangenome analysis to detect genetically linked isolates, designed for bacterial genomic surveillance and…
- nullarborbacteria · genotyping · public-health
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
- Amirabacteria · epidemiology · genotyping
A tool to detect acquired AMR genes directly from long read sequencing data.
- LisSeropublic-health · serotyping
In silico serotype prediction for Listeria monocytogenes
- COVID-19_Dataoutbreak · public-health
COVID-19 Data Repository for Bangladesh and Worldwide Cases
- api.github.com/repos/MDHHS-Bioinformatics/bassetretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-06-29, 9 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/59.json→ .entries["basset"]
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