corge
importedsoftware/corge
Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance and outbreak investigations
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- MDHHS-Bioinformatics
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/MDHHS-Bioinformatics/corge
- Documentation
- unknown
- Tags
- bacteria · cgmlst · clustering · core-genome · epidemiology · genomic-epidemiology · linkage · outbreak
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- poodlebacteria · genomic-epidemiology · linkage · outbreak
Nextflow pipeline that integrates reference-based SNP calling, recombination filtering, and pangenome analysis to detect genetically linked isolates, designed for bacterial genomic surveillance and…
- bassetbacteria · epidemiology · genomic-epidemiology · outbreak
Nextflow pipeline for species-specific typing of bacteria
- chewBBACAbacteria · cgmlst
BSR-Based Allele Calling Algorithm
- PhyloTracecgmlst · epidemiology
PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.
- Amirabacteria · epidemiology
A tool to detect acquired AMR genes directly from long read sequencing data.
- COVID-19_Dataoutbreak
COVID-19 Data Repository for Bangladesh and Worldwide Cases
- api.github.com/repos/MDHHS-Bioinformatics/corgeretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-07-02, 9 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/7.json→ .entries["corge"]
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