poodle
importedsoftware/poodle
Nextflow pipeline that integrates reference-based SNP calling, recombination filtering, and pangenome analysis to detect genetically linked isolates, designed for bacterial genomic surveillance and…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- MDHHS-Bioinformatics
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/MDHHS-Bioinformatics/poodle
- Documentation
- unknown
- Tags
- bacteria · bioinformatics · genomic-epidemiology · genomics-data · linkage · outbreak · pangenome · phylogenetics
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- corgebacteria · genomic-epidemiology · linkage · outbreak
Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance and outbreak investigations
- bassetbacteria · genomic-epidemiology · outbreak
Nextflow pipeline for species-specific typing of bacteria
- GTDBTkbacteria · bioinformatics · phylogenetics
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
- veritigbioinformatics · pangenome
Sequence-level verification of structural variant assemblies against haplotype-resolved references
- raxml-ngbioinformatics · phylogenetics
RAxML Next Generation: faster, easier-to-use and more flexible
- tskitbioinformatics · phylogenetics
Population-scale Ancestral Recombination Graph (ARG) library
- api.github.com/repos/MDHHS-Bioinformatics/poodleretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-07-02, 7 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/16.json→ .entries["poodle"]
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