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covid19

imported

software/covid19-tobiasrausch

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

Machine-generated from the listed sources and not yet reviewed by a human.

record
Category
Software & Systems
Subcategory
unknown
License
BSD-3-Clause(osi)
Status
dormant
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
unknown
Repository
github.com/tobiasrausch/covid19
Documentation
unknown
Tags
consensus · covid19 · covid19-analysis · sars-cov-2 · variant-calling · whole-genome-sequencing
Regulatory
unknown
built by · 1

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • ccsconsensus · variant-calling

    CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

  • ocococonsensus · variant-calling

    Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

  • ilusvariant-calling · whole-genome-sequencing

    A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的…

  • vcfdistvariant-calling · whole-genome-sequencing

    vcfdist: Accurately benchmarking phased variant calls

  • nf-ncov-vocsars-cov-2 · variant-calling

    A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can…

  • uncovarsars-cov-2 · variant-calling

    Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

sources
  1. api.github.com/repos/tobiasrausch/covid19
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2024-12-23, 6 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/13.json→ .entries["covid19-tobiasrausch"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.