EcoliTyper
importedsoftware/ecolityper
EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- www.eskape.bio
- Repository
- github.com/bbeckley-hub/EcoliTyper
- Documentation
- unknown
- Tags
- bioinformatics · cge · clermont-typing · computational-biology · ecoli · epidemiology · escherichia-coli · genotyping
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- Amiraepidemiology · genotyping
A tool to detect acquired AMR genes directly from long read sequencing data.
- bassetepidemiology · genotyping
Nextflow pipeline for species-specific typing of bacteria
- CE-ABCcomputational-biology · epidemiology
CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.
- cellSNPgenotyping
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
- cellsnp-litegenotyping
Efficient genotyping bi-allelic SNPs on single cells
- nullarborgenotyping
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
- api.github.com/repos/bbeckley-hub/EcoliTyperretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-07-28, 27 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/25.json→ .entries["ecolityper"]
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