Higashi

imported

software/higashi

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph

Machine-generated from the listed sources and not yet reviewed by a human.

record

Category: Software & Systems
Subcategory: unknown
License: MIT(osi)
Status: maintained
Maturity: deployed
Organization: unknown
Country: unknown
Homepage: unknown
Repository: github.com/ma-compbio/Higashi
Documentation: unknown
Tags: 3d-genome · hypergraph · machine-learning · single-cell
Regulatory: unknown

built by · 2

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

cooler3d-genome
A cool place to store your Hi-C
juicer3d-genome
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
alevin-frysingle-cell
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
ALLCoolssingle-cell
Toolkit for single-cell DNA methylation analysis.
anndata2risingle-cell
Convert between AnnData and SingleCellExperiment
annsqlsingle-cell
The AnnSQL package enables SQL based queries on AnnData objects.

sources

api.github.com/repos/ma-compbio/Higashi
retrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2025-10-29, 96 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/56.json→ .entries["higashi"]

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