CANCER_VAR_CALL
importedsoftware/cancer-var-call
End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- dormant
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/rvrane/CANCER_VAR_CALL
- Documentation
- unknown
- Tags
- annovar · bioinformatics · bwa · cancer-genomics · gatk · ngs · oncology · somatic-variants
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- CalliNGS-NFbioinformatics · gatk · ngs
GATK RNA-Seq Variant Calling in Nextflow
- GermlineEnrichmentbioinformatics · gatk · ngs
Variant calling pipeline for germline enrichment NGS data
- NGS-variants-traininggatk · ngs
GitHub for the SIB courses NGS - Genome variant analysis
- octopusbioinformatics · somatic-variants
Bayesian haplotype-based mutation calling
Scalable and High Performance Variant Calling on Cluster Environments
- ikarusbioinformatics · cancer-genomics
Identifying tumor cells at the single-cell level using machine learning
- api.github.com/repos/rvrane/CANCER_VAR_CALLretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2024-05-03, 3 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/60.json→ .entries["cancer-var-call"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.