PhyloTrace

Category

Software & Systems

Subcategory

unknown

License

GPL-3.0(osi)

Status

active

Maturity

deployed

Organization

liora-bioinformatics

Country

unknown

Homepage

www.phylotrace.com/

Repository

github.com/liora-bioinformatics/PhyloTrace

Documentation

unknown

Tags

allele-calling · antimicrobial-resistance · bacterial-genomes · bacterial-typing · cgmlst · epidemiology · genetic-analysis · infectious-diseases

Regulatory

unknown

• infinity-a11y
• fpaskali
• simanjo

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• chewBBACAallele-calling · bacterial-typing · cgmlst

  BSR-Based Allele Calling Algorithm

• corgecgmlst · epidemiology

  Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance and outbreak investigations

• SKAbacterial-genomes · epidemiology

  Split Kmer Analysis

• staramrantimicrobial-resistance

  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

• EpiModelepidemiology · infectious-diseases

  Mathematical Modeling of Infectious Disease Dynamics

• epispotepidemiology · infectious-diseases

  A tool for modeling infectious diseases.

1. api.github.com/repos/liora-bioinformatics/PhyloTrace
   retrieved 2026-08-05 · via github-api

   Machine-imported from GitHub search. Last push 2026-08-05, 9 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

/v1/entries/14.json→ .entries["phylotrace"]

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