pysam
importedsoftware/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- pysam-developers
- Country
- unknown
- Homepage
- pysam.readthedocs.io/en/latest/
- Repository
- github.com/pysam-developers/pysam
- Documentation
- unknown
- Tags
- bioinformatics · htslib · ngs · python
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- cyvcf2bioinformatics · htslib
cython + htslib == fast VCF and BCF processing
- hts-nimbioinformatics · htslib
nim wrapper for htslib for parsing genomics data files
- basevarbioinformatics · ngs
This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data
- CalliNGS-NFbioinformatics · ngs
GATK RNA-Seq Variant Calling in Nextflow
- CANCER_VAR_CALLbioinformatics · ngs
End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis
- cievadbioinformatics · ngs
A tool suite for a simple, streamlined and rapid evaluation of variant callsets
- api.github.com/repos/pysam-developers/pysamretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-07-19, 904 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/49.json→ .entries["pysam"]
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