snpkit

Category

Software & Systems

Subcategory

unknown

License

MIT(osi)

Status

dormant

Maturity

deployed

Organization

unknown

Country

unknown

Homepage

alipirani88.github.io/snpkit/

Repository

github.com/alipirani88/snpkit

Documentation

unknown

Tags

bacteria · genomics · ngs · pipeline · snps · variant-calling · vcf

Regulatory

unknown

• alipirani88
• zenalapp

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• snippybacteria · genomics · snps · variant-calling

  :scissors: :zap: Rapid haploid variant calling and core genome alignment

• cievadgenomics · ngs · snps

  A tool suite for a simple, streamlined and rapid evaluation of variant callsets

• indelopegenomics · variant-calling · vcf

  find large indels (in the blind spot between GATK/freebayes and SV callers)

• vcfdistgenomics · variant-calling · vcf

  vcfdist: Accurately benchmarking phased variant calls

• vcfkitgenomics · variant-calling · vcf

  Fast VCF toolkit — normalize, liftover, filter — as a single static binary. 4× faster than bcftools on hot paths. No htslib, no Python, no C dependencies.

• snp-placersnps · variant-calling

  Take information about snps on short sequence reads and accurately place the snps in a reference genome

1. api.github.com/repos/alipirani88/snpkit
   retrieved 2026-08-05 · via github-api

   Machine-imported from GitHub search. Last push 2024-05-15, 6 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

/v1/entries/0.json→ .entries["snpkit"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.