taxonkit
importedsoftware/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- bioinf.shenwei.me/taxonkit
- Repository
- github.com/shenwei356/taxonkit
- Documentation
- unknown
- Tags
- bioinformatics · cross-platform · lca · lineage · taxdump · taxid · taxonkit · taxonomy
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- dada2bioinformatics · taxonomy
Accurate sample inference from amplicon data with single nucleotide resolution
- GTDBTkbioinformatics · taxonomy
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
- kaijubioinformatics · taxonomy
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
- csvtkbioinformatics · cross-platform
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
- rushbioinformatics · cross-platform
A cross-platform command-line tool for executing jobs in parallel
- seqkitbioinformatics · cross-platform
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
- api.github.com/repos/shenwei356/taxonkitretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-07-15, 477 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/5.json→ .entries["taxonkit"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.