GTDBTk
importedsoftware/gtdbtk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- active
- Maturity
- deployed
- Organization
- Ecogenomics
- Country
- unknown
- Homepage
- ecogenomics.github.io/GTDBTk/
- Repository
- github.com/Ecogenomics/GTDBTk
- Documentation
- unknown
- Tags
- archaea · bacteria · bioinformatics · metagenomics · nomenclature · phylogenetics · species-assignments · taxonomy
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- poodlebacteria · bioinformatics · phylogenetics
Nextflow pipeline that integrates reference-based SNP calling, recombination filtering, and pangenome analysis to detect genetically linked isolates, designed for bacterial genomic surveillance and…
- dada2bioinformatics · metagenomics · taxonomy
Accurate sample inference from amplicon data with single nucleotide resolution
- kaijubioinformatics · metagenomics · taxonomy
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
- raxml-ngbioinformatics · phylogenetics
RAxML Next Generation: faster, easier-to-use and more flexible
- tskitbioinformatics · phylogenetics
Population-scale Ancestral Recombination Graph (ARG) library
- taxonkitbioinformatics · taxonomy
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
- api.github.com/repos/Ecogenomics/GTDBTkretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-05-20, 617 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/41.json→ .entries["gtdbtk"]
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