varCA
importedsoftware/varca
Use an ensemble of variant callers to call variants from ATAC-seq data
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- mcvickerlab
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/mcvickerlab/varCA
- Documentation
- unknown
- Tags
- atac-seq-data · machine-learning · random-forest · snakemake · variant-calling
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- gatkVariantCallingsnakemake · variant-calling
Snakemake pipeline for variant calling using GATK
- GEMSCANsnakemake · variant-calling
Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
- grenepipesnakemake · variant-calling
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
- snakemake-ont-bacterial-variantssnakemake · variant-calling
A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
- fetal_heart_analysisrandom-forest
Automated tools for analysing fetal heart cardiac videos
- microscope-autofocusrandom-forest
Autofocusing microscopy images with ML
- api.github.com/repos/mcvickerlab/varCAretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2025-05-14, 23 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/50.json→ .entries["varca"]
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