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vcf_filtering

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software/vcf-filtering

Filter a VCF to discard false positive variants

Machine-generated from the listed sources and not yet reviewed by a human.

record
Category
Software & Systems
Subcategory
unknown
License
Apache-2.0(osi)
Status
dormant
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
unknown
Documentation
unknown
Tags
genomics · machine-learning · nextflow-pipelines · variant-analysis · variant-calling · variant-filtration
Regulatory
unknown
built by · 1

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • variant-extractorvariant-analysis · variant-calling

    Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files.

  • echtvargenomics · variant-analysis

    using all the bits for echt rapid variant annotation and filtering

  • hgvsgenomics · variant-analysis

    Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).

  • slivargenomics · variant-analysis

    genetic variant expressions, annotation, and filtering for great good.

  • apex-nfnextflow-pipelines

    APEX: Automated Protein EXpression in E. coli

  • Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

sources
  1. api.github.com/repos/elowy01/vcf_filtering
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2021-11-25, 7 stars, license reported as Apache-2.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/39.json→ .entries["vcf-filtering"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.