variant-extractor
importedsoftware/variant-extractor
Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- EUCANCan
- Country
- unknown
- Repository
- github.com/EUCANCan/variant-extractor
- Documentation
- unknown
- Tags
- variant-analysis · variant-calling · vcf
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- vcf_filteringvariant-analysis · variant-calling
Filter a VCF to discard false positive variants
- indelopevariant-calling · vcf
find large indels (in the blind spot between GATK/freebayes and SV callers)
- picovcfvariant-calling · vcf
Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.
- snpkitvariant-calling · vcf
Modular workflow for Microbial Variant Calling and SNP diagnostics.
- vcfdistvariant-calling · vcf
vcfdist: Accurately benchmarking phased variant calls
- vcfkitvariant-calling · vcf
Fast VCF toolkit — normalize, liftover, filter — as a single static binary. 4× faster than bcftools on hot paths. No htslib, no Python, no C dependencies.
- api.github.com/repos/EUCANCan/variant-extractorretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-07-09, 7 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/23.json→ .entries["variant-extractor"]
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